relation: http://publicatio.bibl.u-szeged.hu/36296/
title: Molecular profiling reveals novel gene fusions and genetic markers for refined patient stratification in pediatric acute lymphoblastic leukemia
creator:  Péterffy Borbála
creator:  Krizsán Szilvia
creator:  Egyed Bálint
creator:  Bedics Gábor
creator:  Benard-Slagter Anne
creator:  Palit Sander
creator:  Erdélyi Dániel
creator:  Müller Judit
creator:  Nagy Tibor
creator:  Hegyi Lajos
creator:  Bekő Anna
creator:  Kenéz Lili Anna
creator:  Jakab Zsuzsanna
creator:  Péter György
creator:  Zombori Marianna
creator:  Csanádi Krisztina
creator:  Ottóffy Gábor
creator:  Csernus Katalin
creator:  Vojcek Ágnes
creator:  Tiszlavicz Lilla Györgyi
creator:  Gábor Krisztina
creator:  Kelemen Ágnes
creator:  Hauser Péter
creator:  Kállay Krisztián
creator:  Kertész Gabriella
creator:  Gaál Zsuzsanna
creator:  Szegedi István
creator:  Barna Gábor
creator:  Márk Ágnes
creator:  Haltrich Irén
creator:  Hevessy Zsuzsanna
creator:  Ujfalusi Anikó
creator:  Kajtár Béla
creator:  Timár Botond
creator:  Kiss Csongor
creator:  Kriván Gergely
creator:  Matolcsy András
creator:  Savola Suvi
creator:  Kovács Gábor
creator:  Bödör Csaba
creator:  Alpár Donát
subject: 03.02. Klinikai orvostan
description: Risk-adapted treatment protocols conferred remarkable improvement in the survival rates of pediatric acute lymphoblastic leukemia/lymphoma (ALL/LBL). Nevertheless, clinical management is still challenging in certain molecular subgroups and in the presence of alterations associated with an increased rate of relapse. In this study, disease-relevant genomic and transcriptomic profiles were established in a prospective, multicenter, real-world cohort involving 192 children diagnosed with ALL/LBL. Gene fusions were detected in 34.9% of B-ALL and 46.4% of T-ALL patients, with novel chimeric genes involving JAK2, KMT2A, PAX5, RUNX1 and NOTCH1, and with KMT2A-rearranged patients displaying the worst 3-year event-free survival (p=0.019). Non-synonymous mutations were uncovered in 74.9% of the analyzed patients, and a pairwise scrutiny of genetic lesions revealed recurrent clonal selection mechanisms commonly converging on the same pathway (e.g. Ras, JAK/STAT and Notch) in individual patients. Investigation of matched diagnostic and relapse samples unraveled complex subclonal variegation, and mutations affecting the NT5C2, TP53, CDKN2A, and PIK3R1 genes, emerging at the time of relapse. TP53 and CREBBP mutations, even as subclonal aberrations, were associated with shorter 3-year event-free survival among all patients with B-ALL (TP53 mutant vs wild-type: p=0.008, CREBBP mutant vs wild-type: p=0.010); and notably, B-ALL patients showing no measurable residual disease on day 33 could be further stratified based on TP53 mutational status (p<0.001). Our in-depth molecular characterization performed across all risk groups identified novel opportunities for molecularly targeted therapy in 55.9% of high-risk and in 31.6% of standard/intermediate-risk patients.
date: 2025
type: Folyóiratcikk
type: PeerReviewed
format: text
identifier: http://publicatio.bibl.u-szeged.hu/36296/1/PIIS0893395225000377.pdf
identifier:     Péterffy Borbála;  Krizsán Szilvia;  Egyed Bálint;  Bedics Gábor;  Benard-Slagter Anne;  Palit Sander;  Erdélyi Dániel;  Müller Judit;  Nagy Tibor;  Hegyi Lajos;  Bekő Anna;  Kenéz Lili Anna;  Jakab Zsuzsanna;  Péter György;  Zombori Marianna;  Csanádi Krisztina;  Ottóffy Gábor;  Csernus Katalin;  Vojcek Ágnes;  Tiszlavicz Lilla Györgyi;  Gábor Krisztina;  Kelemen Ágnes;  Hauser Péter;  Kállay Krisztián;  Kertész Gabriella;  Gaál Zsuzsanna;  Szegedi István;  Barna Gábor;  Márk Ágnes;  Haltrich Irén;  Hevessy Zsuzsanna;  Ujfalusi Anikó;  Kajtár Béla;  Timár Botond;  Kiss Csongor;  Kriván Gergely;  Matolcsy András;  Savola Suvi;  Kovács Gábor;  Bödör Csaba;  Alpár Donát: Molecular profiling reveals novel gene fusions and genetic markers for refined patient stratification in pediatric acute lymphoblastic leukemia.   MODERN PATHOLOGY, 38 (6).   ISSN 0893-3952 (2025)     
identifier: doi:10.1016/j.modpat.2025.100741
relation: https://doi.org/10.1016/j.modpat.2025.100741
relation: 35798493
language: eng